THE HOMEPAGE OF

MARWAN ABDELLAH

PUBLICATIONS

Peer-Reviewed Journal Articles

Bio-physically Plausible Visualization of Highly Scattering Fluorescent Neocortical Models for In Silico Experimentation

Marwan Abdellah, Ahmet Bilgili, Julian Shillcock, Stefan Eilemann, Henry Markram, and Felix Schürmann

 

BMC Bioinformatics 2017

Reconstruction and Simulation of Neocortical Microcircuitry

Henry Markram, Eilif Muller, Srikanth Ramaswamy, Michael W. Reimann, Marwan Abdellah, Carlos Aguado Sanchez, Anastasia Ailamaki, Lidia Alonso-Nanclares, Nicolas Antille, Selim Arsever, Guy Antoine Atenekeng Kahou, Thomas K. Berger, Ahmet Bilgili, Nenad Buncic, Athanassia Chalimourda, Giuseppe Chindemi, Jean-Denis Courcol, Fabien Delalondre, Vincent Delattre, Shaul Druckmann, Raphael Dumusc, James Dynes, Stefan Eilemann, Eyal Gal, Michael Emiel Gevaert, Jean-Pierre Ghobril, Albert Gidon, Joe W. Graham, Anirudh Gupta, Valentin Haenel, Etay Hay, Thomas Heinis, Juan B. Hernando, Michael Hines, Lida Kanari, Daniel Keller, John Kenyon, Georges Khazen, Yihwa Kim, James G. King, Zoltan Kisvarday, Pramod Kumbhar, Sébastien Lasserre, Jean-Vincent Le Bé, Bruno R.C. Magalhães, Angel Merchán-Pérez, Julie Meystre, Benjamin Roy Morrice, Jeffrey Muller, Alberto Muñoz-Céspedes, Shruti Muralidhar, Keerthan Muthurasa, Daniel Nachbaur, Taylor H. Newton, Max Nolte, Aleksandr Ovcharenko, Juan Palacios, Luis Pastor, Rodrigo Perin, Rajnish Ranjan, Imad Riachi, José-Rodrigo Rodríguez, Juan Luis Riquelme, Christian Rössert, Konstantinos Sfyrakis, Ying Shi, Julian C. Shillcock, Gilad Silberberg, Ricardo Silva, Farhan Tauheed, Martin Telefont, Maria Toledo-Rodriguez, Thomas Tränkler, Werner Van Geit, Jafet Villafranca Díaz, Richard Walker, Yun Wang, Stefano M. Zaninetta, Javier DeFelipe, Sean L. Hill, Idan Segev, Felix Schürmann

 

 

Cell, Volume 163, Issue 2, p456–492, 8 October 2015

The Neocortical Microcircuit Collaboration Portal

Srikanth Ramaswamy, Jean-Denis Courcol, Marwan Abdellah, Stanislaw Adaszewski, Nicolas Antille, Selim Arsever, Atenekeng Kahou Guy Antoine, Ahmet Bilgili, Yury Brukau, Giuseppe Chindemi, Raphael Dumusc, Stefan Eilemann, Lida Kanari, Daniel Keller, James G. King, Rajnish Ranjan, Michael Wolfgang Reimann, Christian Roessert, Martin Telefont, Werner Van Geit, Jafet Villafranca_Diaz, Richard Walker, Yun Wang, Stefano Zaninetta, Javier DeFelipe, Sean L Hill, Jeffrey Muller, Idan Segev, Felix Schürmann, Eilif Benjamin Muller and Henry Markram

 

Data Report Article

Frontiers in Neural Circuits, ISSN 1662-5110

Physically-based In Silico Light Sheet Microscopy for Visualizing Fluorescent Brain Models

Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, and Felix Schürmann

 

BMC Bioinformatics 2015

High Performance GPU-based Fourier Volume Rendering

Marwan Abdellah, Ayman Eldeib, and Amr Sharawi

 

International Journal of Biomedical Imaging, 2015
Article ID 590727

Conference Proceedings

High Performance Ray Tracing of Ultrasound Volumes on Heterogeneous Computing Architectures

Marwan Abdellah, Asem Abdelaziz and Ayman Eldeib

 

European Medical and Biological Engineering Conference (EMBEC '17)

June 2017 in Tampere, Finland

Bio-physically Plausible Visualization of Highly Scattering Fluorescent Neocortical Models for In Silico Experimentation

Marwan Abdellah, Ahmet Bilgili, Julian Shillcock, Stefan Eilemann, Henry Markram, and Felix Schürmann

 

6th Workshop on Biological Data Visualization (BioVis 2016), IEEE VIS 2016

October 2016 in Baltimore, MD, USA

Parallel Generation of Digitally Reconstructed Radiographs on Heterogeneous Multi-GPU Workstations

Marwan Abdellah, Asem Abdelaziz, Eslam Ali, Sherief Abdelaziz, Abdelrahman Sayed, Mohamed I. Owis and Ayman Eldeib

 

38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS) (EMBC 2016)

August 2016 in Florida, USA

Efficient Rendering of Digitally Reconstructed Radiographs on Heterogeneous Computing Architectures using Central Slice Theorem

Marwan Abdellah, Mohamed Abdallah, Mohamed Alzanati and Ayman Eldeib

 

38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS) (EMBC 2016)

August 2016 in Florida, USA

Physically-based Rendering of Highly Scattering Fluorescent Solutions using Path Tracing

Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, and Felix Schürmann

 

Eurographics 2016

May 2016 in Lisbon, Portugal

Interactive High Resolution Reconstruction of 3D Ultrasound Volumes on the GPU

Marwan Abdellah, Asem Abdelaziz and Ayman Eldeib

 

2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro

April 2016 in Prague, Czech Republic

Optimized GPU-accelerated Framework for X-ray Rendering using k-space Volume Reconstruction

Marwan Abdellah, Yassin Amer and Ayman Eldeib

 

XIV Mediterranean Conference on Medical & Biological Engineering & Computing (MEDICON 2016)

April 2016 in Paphos, Cyprus

Accelerating DRR Generation Using Fourier Slice Theorem on the GPU

Marwan Abdellah,  Ayman M. Eldeib, Mohamed Owis

 

37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS) (EMBC 2015)

August 2015 in Milan, Italy

GPU Acceleration for Digitally Reconstructed Radiographs Using Bindless Texture Objects and CUDA/OpenGL Interoperability

Marwan Abdellah,  Ayman M. Eldeib, Mohamed Owis

37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS) (EMBC 2015)

August 2015 in Milan, Italy

Physically-based In Silico Light Sheet Microscopy for Visualizing Fluorescent Brain Models

Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, and Felix Schürmann

 

5th Symposium on Biological Data Visualization (BioVis 2015)

July 2015 in Dublin, Ireland

A Computational Model of Light-Sheet Fluorescence Microscopy using Physically-based Rendering

Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, and Felix Schürmann

 

Eurographics 2015

May 2015 in Zürich, Switzerland

Offline Large Scale Fourier Volume Rendering on Low-end Hardware

Marwan Abdellah, Ayman Eldeib, and Amr Sharawi

 

IEEE, Proceedings of 7th Cairo International Biomedical Engineering Conference (CIBEC 2014)

December 2014 in Cairo, Egypt

MATLAB-based Fourier Volume Rendering Framework

Marwan Abdellah, Ayman Eldeib and Amr Sharawi

 

IEEE, Proceedings of 7th Cairo International Biomedical Engineering Conference (CIBEC 2014)

December 2014 in Cairo, Egypt

cufftShift: High Performance CUDA-accelerated FFT-shift Library

Marwan Abdellah

 

Proceedings of the High Performance Computing Symposium (HPC '14), Article No. 5,

22nd High Performance Computing Symposium,

April 2014 in Tampa, FL, USA

Constructing a Functional Fourier Volume Rendering Pipeline on Heterogeneous Platforms

Marwan Abdellah, Ayman Eldeib, and Amr Shaarawi

 

IEEE, Proceedings of 6th Cairo International Biomedical Engineering Conference (CIBEC 2012)

High Performance Multi-dimensional (2D/3D) FFT-Shift Implementation on Graphics Processing Units (GPUs)

Marwan Abdellah, Salah Saleh, Ayman Eldeib, and Amr Shaarawi

 

IEEE, Proceedings of 6th Cairo International Biomedical Engineering Conference (CIBEC 2012)

December 2012 in Cairo, Egypt

High Performance CUDA-based Implementation for the 2D Version of the Maximum Subarray Problem (MSP)

Salah Saleh, Marwan Abdellah, Ahmed A. Abdel Raouf, and Yasser M. Kadah

 

IEEE, Proceedings of 6th Cairo International Biomedical Engineering Conference (CIBEC 2012)

December 2012 in Cairo, Egypt

Parallel Rendering on Hybrid Multi-GPU Clusters

Stefan Eilemann, Ahmet Bilgili, Marwan Abdellah, Juan Hernando, Maxim Makhinya, and Renato Pajarola

 

Eurographics Symposium on Parallel Graphics and Visualization (EGPGV'12)

May 2012 in Cagliari, Italy

GPU-Based Reconstruction and Display for 4D Ultrasound Data

Ahmed Elnokrashy, Ahmed Elmalky, Tamer Hosny, Marwan Abdellah, Alaa Megawer, Abubakr Alsebai, Abou-Bakr Youssef and Yasser Kadah

 

2009 IEEE International Ultrasonics Symposium

September 2009 in Rome, Italy

Software Development for Low Cost, High quality, Real-time, 4D Ultrasound on Personal Computers

 Abd Ellah M., Megawer A. and Kadah Y. M.

 

26th National Radio Science Conference (NRSC), Union Radio Scientifique Internationale (URSI), March 2009 in Cairo, Egypt

Posters & Abstracts

In Silico Voltage Sensitive Dye Imaging in a Digital Reconstruction of Somatosensory Cortex

 

A Unifying Model of the Neocortical Column 15: High Performance Computing and Software Development Challenges

 

Theses

High Performance Fourier Volume Rendering on Graphics Processing Units (GPUs)

 Marwan Abdellah

 

M.Sc. Theses, Biomedical Engineering

Systems & Biomedical Engineering, Faculty of Engineering, Cairo University

THE HOMEPAGE OF

MARWAN ABDELLAH

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